PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022669.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 493aa    MW: 53505.1 Da    PI: 5.2993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022669.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde l+++++  G g+W+  ++  g+ R++k+c++rw +yl
      Pbr022669.1 14 KGRWTAEEDEMLLNYIQANGEGSWRCLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding47.34.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E+++++++++ lG++ W++Ia  ++ gRt++++k++w+++l
      Pbr022669.1  67 RGNISSQEEDIIIKLHASLGNR-WSLIAGQLP-GRTDNEIKNYWNSHL 112
                      78999*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.954961IPR017930Myb domain
SuperFamilySSF466892.33E-2711108IPR009057Homeodomain-like
SMARTSM007172.8E-101363IPR001005SANT/Myb domain
PfamPF002498.2E-131461IPR001005SANT/Myb domain
CDDcd001671.76E-81661No hitNo description
PROSITE profilePS5129424.20562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2465116IPR009057Homeodomain-like
SMARTSM007173.3E-1466114IPR001005SANT/Myb domain
PfamPF002494.2E-1367112IPR001005SANT/Myb domain
CDDcd001678.33E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEMLLNYIQ ANGEGSWRCL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSQEEDIIIK LHASLGNRWS LIAGQLPGRT DNEIKNYWNS HLSRKIGTFR  120
RPATTTAITT EISTSSPPAG DEVSAAMELG PPKRRGGRTS RWAMKKDKTS STTKPKGLKA  180
RLRQSHHKHD NIAAAAAADD DDRLNNAHEA IALPTKSNNK NVDTMQDGYV LPMGVPDQQQ  240
ETRGGGTAMP ATVIDHQKET DGEKLILGPH PHVHGDDDMN EYVGINGGLL GFTDYLMDDI  300
NEDEILDPNG AMALSSSEIN IHQDADHFPN AVISDHQDTE LPSSCDQLVI SPNKVMKTTT  360
TTTTTTTAAS DDHHDQELES SSCGCNLSST SSISNSNGKV VTGDLHSCGS SLSLTNTINC  420
DTEDGHTAGG FGDHDQILWD WESVLSNAGT GHDYLWDGHD RQNMLSWLRE GESATAAGDG  480
DHADAMVAWL LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744700.0DQ074470.1 Malus x domestica MYB22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378690.10.0PREDICTED: uncharacterized protein LOC103967156
TrEMBLA0A0N7EZN10.0A0A0N7EZN1_PYRPY; MYB12
STRINGGLYMA02G01740.11e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-70myb domain protein 12